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All functions

CompDb() hasMsMsSpectra() src_compdb() tables() copyCompDb() dbconn(<CompDb>) Spectra(<CompDb>) supportedFilters(<CompDb>) metadata(<CompDb>) spectraVariables(<CompDb>) compoundVariables(<CompDb>) compounds(<CompDb>) insertSpectra(<CompDb>,<Spectra>) deleteSpectra(<CompDb>) mass2mz(<CompDb>) insertCompound(<CompDb>) deleteCompound(<CompDb>)
Simple compound (metabolite) databases
CompoundIdFilter() SpectrumIdFilter() NameFilter() MsmsMzRangeMinFilter() MsmsMzRangeMaxFilter() ExactmassFilter() FormulaFilter() InchiFilter() InchikeyFilter() IonIdFilter() IonAdductFilter() IonMzFilter() IonRtFilter()
Filters supported by CompDb and IonDb
ionVariables(<IonDb>) ions(<IonDb>) insertIon(<IonDb>) deleteIon(<IonDb>) IonDb(<missing>,<missing>) IonDb(<character>,<missing>) IonDb(<CompDb>,<missing>) IonDb(<DBIConnection>,<missing>) IonDb(<character>,<CompDb>) IonDb(<DBIConnection>,<CompDb>)
IonDb: compound database with additional ion information
MsBackendCompDb() backendInitialize(<MsBackendCompDb>) show(<MsBackendCompDb>) peaksData(<MsBackendCompDb>) peaksVariables(<MsBackendCompDb>) dataStorage(<MsBackendCompDb>) `intensity<-`(<MsBackendCompDb>) `mz<-`(<MsBackendCompDb>) spectraData(<MsBackendCompDb>) spectraNames(<MsBackendCompDb>) `spectraNames<-`(<MsBackendCompDb>) `[`(<MsBackendCompDb>,<ANY>) `$<-`(<MsBackendCompDb>) precScanNum(<MsBackendCompDb>) tic(<MsBackendCompDb>) backendBpparam(<MsBackendCompDb>)
CompDb-based MS spectrum backend
compound_tbl_lipidblast()
Extract compound data from LipidBlast
compound_tbl_sdf()
Extract compound data from a file in SDF format
createCompDb() createCompDbPackage() make_metadata() emptyCompDb()
Create a CompDb database
expandMzIntensity()
Expand m/z and intensity values in a data.frame
import_mona_sdf()
Import compound and spectrum information from MoNa
msms_spectra_hmdb()
Import MS/MS spectra from HMDB xml files
msms_spectra_mona()
Import MS/MS spectra from MoNa